Pipeline Execution

We have provided a complete pipeline to execute ancestry prediction from single cell data that has been built with Snakemake and packaged into a Singularity image with all the required softwares and supporting files.

To run your dataset(s) manually, procded to the Preparing to Execute the Pipeline documentation.

Support

If you have any questions, suggestions or issues with any part of the Ancestry Prediction from scRNA-seq Data Pipeline, feel free to submit an issue or email Drew Neavin (d.neavin @ garvan.org.au)